PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 192aa    MW: 22184.7 Da    PI: 9.8151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29544genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0578100123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA29544  78 FVCEICLKGFQRDQNLQLHRRGH 100
                                89*******************88 PP

2zf-C2H214.20.00012154176123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k +  +s++k H +t+
  Tp57577_TGAC_v2_mRNA29544 154 WKCEKCSKFYAVQSDMKAHSKTC 176
                                58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.41E-677100No hitNo description
SMARTSM003550.2178100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.30578100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355250119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.41E-6149174No hitNo description
SMARTSM00355100154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
IEENMDNRDI SNGFLHENTT SSSNENPPIL KRKRNLPGNP VICICVFVSV FHRLYIYADP  60
EAEVISLSPK TLMATNRFVC EICLKGFQRD QNLQLHRRGH NLPWKLKQRT SKEIRKRVYV  120
CPEKTCVHNH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KFYAVQSDMK AHSKTCGTRE  180
YKCDCGTIFS R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405471e-109AC140547.18 Medicago truncatula clone mth2-17p16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487192.21e-113PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like
SwissprotQ9ZWA69e-97IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLI1M3P41e-105I1M3P4_SOYBN; Uncharacterized protein
STRINGGLYMA13G36960.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.15e-98C2H2 family protein